YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SNQ2
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	553	0.59
Transmembrane Helix	554	574	0.88
Cytoplasmic	575	601	0.74
Transmembrane Helix	602	623	0.86
Non-Cytoplasmic	624	629	0.59
Transmembrane Helix	630	648	0.87
Cytoplasmic	649	660	0.57
Transmembrane Helix	661	682	0.85
Non-Cytoplasmic	683	770	0.77
Transmembrane Helix	771	789	0.80
Cytoplasmic	790	1188	0.76
Transmembrane Helix	1189	1209	0.90
Non-Cytoplasmic	1210	1215	0.58
Transmembrane Helix	1216	1239	0.79
Cytoplasmic	1240	1257	0.62
Transmembrane Helix	1258	1272	0.50
Non-Cytoplasmic	1273	1273	0.46
Transmembrane Helix	1274	1296	0.70
Cytoplasmic	1297	1303	0.57
Transmembrane Helix	1304	1326	0.91
Non-Cytoplasmic	1327	1334	0.51
Transmembrane Helix	1335	1356	0.91
Cytoplasmic	1357	1454	0.74
Transmembrane Helix	1455	1477	0.92
Non-Cytoplasmic	1478	1501	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIKSTQDS SHNAVARSSS ASFAASEESF TGITHDKDEQ SDTPADKLTK MLTGPARDTA  60
   61 SQISATVSEM APDVVSKVES FADALSRHTT RSGAFNMDSD SDDGFDAHAI FESFVRDADE 120
  121 QGIHIRKAGV TIEDVSAKGV DASALEGATF GNILCLPLTI FKGIKAKRHQ KMRQIISNVN 180
  181 ALAEAGEMIL VLGRPGAGCS SFLKVTAGEI DQFAGGVSGE VAYDGIPQEE MMKRYKADVI 240
  241 YNGELDVHFP YLTVKQTLDF AIACKTPALR VNNVSKKEYI ASRRDLYATI FGLRHTYNTK 300
  301 VGNDFVRGVS GGERKRVSIA EALAAKGSIY CWDNATRGLD ASTALEYAKA IRIMTNLLKS 360
  361 TAFVTIYQAS ENIYETFDKV TVLYSGKQIY FGLIHEAKPY FAKMGYLCPP RQATAEFLTA 420
  421 LTDPNGFHLI KPGYENKVPR TAEEFETYWL NSPEFAQMKK DIAAYKEKVN TEKTKEVYDE 480
  481 SMAQEKSKYT RKKSYYTVSY WEQVKLCTQR GFQRIYGNKS YTVINVCSAI IQSFITGSLF 540
  541 YNTPSSTSGA FSRGGVLYFA LLYYSLMGLA NISFEHRPIL QKHKGYSLYH PSAEAIGSTL 600
  601 ASFPFRMIGL TCFFIILFFL SGLHRTAGSF FTIYLFLTMC SEAINGLFEM VSSVCDTLSQ 660
  661 ANSISGILMM SISMYSTYMI QLPSMHPWFK WISYVLPIRY AFESMLNAEF HGRHMDCANT 720
  721 LVPSGGDYDN LSDDYKVCAF VGSKPGQSYV LGDDYLKNQF QYVYKHTWRN FGILWCFLLG 780
  781 YVVLKVIFTE YKRPVKGGGD ALIFKKGSKR FIAHADEESP DNVNDIDAKE QFSSESSGAN 840
  841 DEVFDDLEAK GVFIWKDVCF TIPYEGGKRM LLDNVSGYCI PGTMTALMGE SGAGKTTLLN 900
  901 TLAQRNVGII TGDMLVNGRP IDASFERRTG YVQQQDIHIA ELTVRESLQF SARMRRPQHL 960
  961 PDSEKMDYVE KIIRVLGMEE YAEALVGEVG CGLNVEQRKK LSIGVELVAK PDLLLFLDEP1020
 1021 TSGLDSQSSW AIIQLLRKLS KAGQSILCTI HQPSATLFEE FDRLLLLRKG GQTVYFGDIG1080
 1081 KNSATILNYF ERNGARKCDS SENPAEYILE AIGAGATASV KEDWHEKWLN SVEFEQTKEK1140
 1141 VQDLINDLSK QETKSEVGDK PSKYATSYAY QFRYVLIRTS TSFWRSLNYI MSKMMLMLVG1200
 1201 GLYIGFTFFN VGKSYVGLQN AMFAAFISII LSAPAMNQIQ GRAIASRELF EVRESQSNMF1260
 1261 HWSLVLITQY LSELPYHLFF STIFFVSSYF PLRIFFEASR SAVYFLNYCI MFQLYYVGLG1320
 1321 LMILYMSPNL PSANVILGLC LSFMLSFCGV TQPVSLMPGF WTFMWKASPY TYFVQNLVGI1380
 1381 MLHKKPVVCK KKELNYFNPP NGSTCGEYMK PFLEKATGYI ENPDATSDCA YCIYEVGDNY1440
 1441 LTHISSKYSY LWRNFGIFWI YIFFNIIAMV CVYYLFHVRQ SSFLSPVSIL NKIKNIRKKK1500
 1501 Q