YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|106635740, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.56
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	34	0.69
Transmembrane Helix	35	55	0.83
Cytoplasmic	56	64	0.77
Transmembrane Helix	65	87	0.86
Non-Cytoplasmic	88	124	0.84
Transmembrane Helix	125	146	0.82
Cytoplasmic	147	331	0.87
Transmembrane Helix	332	356	0.79
Non-Cytoplasmic	357	391	0.57
Transmembrane Helix	392	413	0.78
Cytoplasmic	414	424	0.48
Transmembrane Helix	425	450	0.76
Non-Cytoplasmic	451	482	0.58
Transmembrane Helix	483	516	0.70
Cytoplasmic	517	525	0.82
Transmembrane Helix	526	549	0.84
Non-Cytoplasmic	550	557	0.67
Transmembrane Helix	558	582	0.80
Cytoplasmic	583	593	0.78
Transmembrane Helix	594	617	0.84
Non-Cytoplasmic	618	650	0.82
Transmembrane Helix	651	675	0.79
Cytoplasmic	676	684	0.72
Transmembrane Helix	685	704	0.85
Non-Cytoplasmic	705	709	0.74
Transmembrane Helix	710	731	0.81
Cytoplasmic	732	740	0.74
Transmembrane Helix	741	762	0.86
Non-Cytoplasmic	763	767	0.73
Transmembrane Helix	768	789	0.80
Cytoplasmic	790	796	0.71
Transmembrane Helix	797	817	0.76
Non-Cytoplasmic	818	850	0.57
Transmembrane Helix	851	872	0.71
Cytoplasmic	873	880	0.55
Transmembrane Helix	881	901	0.55
Non-Cytoplasmic	902	921	0.58
Transmembrane Helix	922	943	0.74
Cytoplasmic	944	953	0.58
Transmembrane Helix	954	978	0.65
Non-Cytoplasmic	979	1060	0.52
Transmembrane Helix	1061	1087	0.68
Cytoplasmic	1088	1099	0.38
Transmembrane Helix	1100	1118	0.54
Non-Cytoplasmic	1119	1132	0.50
Transmembrane Helix	1133	1152	0.42
Cytoplasmic	1153	1164	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRSVALLL LGFFLSVQLS PSLQGGVYVP QAGGGGAGPG GAGVLPGAGL YPGAGSSPYK  60
   61 AAKAAAGGYG GAAGAGALGA GGYGAGGYGG YGGYGGAGRF YPMAGGLKPA KSGAGLPGGV 120
  121 LPGGVLPGGV LPGGVLPGGV LPGGVLPGGA GGKPPKGPGV GGAGTGLPGL GIPQTGVQGL 180
  181 GPGGVGPGAK AAKAGKAPVP GVGVPGPYQG GLPGQGFNGR GVLPGVATGT GLKPKSGGGQ 240
  241 GLVPGAGGRG PFGGPLQQGV FHGYPLKSPK APGAGLPYTG GKLPYGYGGF GGGAGLPGGK 300
  301 AGAGSKPGYP TGTGVGSLGV SAAQAKAAKY GAGAGLGGAG AFPGGVGAGL GGAGAFPGGA 360
  361 GGFYPGAVGT GGLTPAQAKA AKYGAVPGAT GIGGLPGAGG LFPGPGVGGA GALSPAQAKA 420
  421 AKYGAGAVPG GAGVLPGGAG VLPGGAGGIY PAPGGAGALS PAQAKAAKYG AVPGGAGVLP 480
  481 GGAGVLPGGA GVLPGGAGIV PGAGGVYPAP GGAGALSPAQ AKAAKYGAGA VPGGAGILPG 540
  541 GAGILPGGAG ILPGGAGILP GGAGIVPGAG GVYPGAGGAG ALSPAQAKAA KYGAGAVPGG 600
  601 AGILPGGAGI LPGGAGIGPG GVYPGAGGAG ALSPAQAKAA KYGAVPGGAG ILPGGAGILP 660
  661 GAGGVYPGAG GAGALSPAQA KAAKYGAGAV PGGAGVLPGG AGIVPGRTGI VPAGPGIVPG 720
  721 AGGVYPATGG LTPAQAKAAK YGLGAAGGAG AVPGVGGLYP GAGGAGVAPG YGSVAGLGGQ 780
  781 LGAGGLAAGA KPPKYGVPGG TGFGVPGGVP GGIPITGPGG YPAGAKALKY GLGSGGLPAG 840
  841 TGVVPGLQRP GLGGALGGAG TGTGYPFGGY GAGAKPPKYG VPGGVPGGVP GGVPGGVPGG 900
  901 YPAGVKPPKY GVAGGAGTVP GAGGVPLAGT GTGLAPGAGV GGYPGGVKPP KTGAGIAGTG 960
  961 IAAPGATPGG TGIVVPGVPG GTGIAVPSGT GVPILPSGKP AKLPTLAPAG TAVPGGAQRV1020
 1021 PGAVPGGAYP YGSGQYYGSA GPSGVGTGVL PGAKPLKAPG VGGAGGVGGV GGLYPGAGVG1080
 1081 LGTGGVGTGA KPPKPGYGSV GTGYAQPGGV AAGGYGAYPG GYGAGLSPQQ AKAAKYGGGL1140
 1141 TGFLGGGYRG GAGCQGKYCG RRRK