YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190405210
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVTGVFLT LLRFSQFASS VLVMSLLAYA IHAYGNRGNK KTNFTLATGV ISVFYLIALG  60
   61 ILCLALPTLI YIGMYFCAEL IVCMLWLAAF VVLAKAQGER SCSNTNADGL YYNPYSGQYT 120
  121 ADSHRRACNS SQAAIAFSGL CFVLFLISVI LLGINVLTPI RKRYQTQGMW RSGASMGTKL 180
  181 HRWSGLALSE PFEETAAYDN TNVRTGDVEA GAGDNAAYTS EPNGDARYAT NDPNGQYHTT 240
  241 TTNTRYTTTT ADPKTRYTTN DRNPGSANVA NSAVDQHAYS TDESGDRSYQ EKVTEGAHSG 300
  301 AMSGSTAEPN RNVNQMP

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.54
Transmembrane Helix	14	35	0.87
Cytoplasmic	36	43	0.54
Transmembrane Helix	44	66	0.89
Non-Cytoplasmic	67	70	0.45
Transmembrane Helix	71	94	0.85
Cytoplasmic	95	132	0.62
Transmembrane Helix	133	157	0.89
Non-Cytoplasmic	158	317	0.63