YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SHR3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSYSDFCSI GTAMILSATT FLMGVFFSNM PYDYHLLFNP NSTQEHFDLA LRHYQILHET  60
   61 PLPVIVTLCV VAGIGLVGGT IKVFKPNPEL QMFEYCSLGL YVLAICVFLT NVKTGIDCSV 120
  121 SHNWGEVTEN QGLAVIASSN IILLVMFAGV IILQIGLWYS NWDLQKRLKE FYAQEEREAA 180
  181 NAGKKTEKVD NAKKNDNKSK GAQKRKNAKK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	28	0.92
Non-Cytoplasmic	29	61	0.92
Transmembrane Helix	62	84	0.90
Cytoplasmic	85	94	0.83
Transmembrane Helix	95	115	0.89
Non-Cytoplasmic	116	133	0.92
Transmembrane Helix	134	159	0.86
Cytoplasmic	160	210	0.98