YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YD206_YEAST
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	26	0.94
Non-Cytoplasmic	27	33	0.80
Transmembrane Helix	34	56	0.77
Cytoplasmic	57	73	0.61
Transmembrane Helix	74	90	0.66
Non-Cytoplasmic	91	107	0.64
Transmembrane Helix	108	129	0.89
Cytoplasmic	130	154	0.75
Transmembrane Helix	155	175	0.84
Non-Cytoplasmic	176	178	0.75
Transmembrane Helix	179	199	0.79
Cytoplasmic	200	501	0.88
Transmembrane Helix	502	524	0.75
Non-Cytoplasmic	525	559	0.88
Transmembrane Helix	560	577	0.97
Cytoplasmic	578	589	0.81
Transmembrane Helix	590	611	0.92
Non-Cytoplasmic	612	617	0.72
Transmembrane Helix	618	639	0.81
Cytoplasmic	640	650	0.66
Transmembrane Helix	651	672	0.89
Non-Cytoplasmic	673	709	0.91
Transmembrane Helix	710	730	0.94
Cytoplasmic	731	738	0.86
Transmembrane Helix	739	760	0.89
Non-Cytoplasmic	761	762	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKPLRWLIT IAFYVSNVIL IGYSLSSNGS ISEFYLHSVV LIECFSLLGV VTSDCLTPSL  60
   61 SYISSNIFHI SDRVSGMTLL ALGNALPDIT STYQSMKSGV TSLAIGELFG GIFFLLTVVI 120
  121 GLMGCVATIQ FQHDKSIETY TEESFDQNLS YDRSNYILDV GIFTFMLLVS GTFLADGRLY 180
  181 FWECIVMVLT YCCCAVYLIK SYKYPCEIND ALEREVEIKK TVLANNHITV PNRFTLTTTS 240
  241 DITSTDDGIR YVRPLGDTQI DEDNAISLDP TRLPSKSLDN ISRFNQGIPE RRDLIRRRIR 300
  301 GYLRSHYHGW VRMTLQDLLN IWEKQNLFNN TVKSLSLPSD DTHLFTKASL DEEGRPLIRK 360
  361 RMNSLQPKDF YKYLSLRNGE NSNALDTAIS APQNEYQTYY NEPTSLFLTV PQKKTSKKSL 420
  421 SCDRIPNLVR SNNIILNDEA TRTQESTNAL NSISDVIDNS LLQYERDDII LDRTLSLCST 480
  481 KSRTAWHSFQ LYNYLTDVSL EIGFFEFLSL LVTTPVSIIL YLSIPSEISQ TDHDLPLSYL 540
  541 QNIQLIASPI ILNQLITNNF SFWLLILSLV IAILLYFKTR TIPNKFNSDI IFTVAFLLSL 600
  601 ACLSKAVHII VVTLTHWINV FNISETILGL TIFTWGNSIG DLVSNITFVK IGVLEIAIGA 660
  661 CFGSPLLYFL FGVGFDGIMI MLGDKTGKIV SGRDSNILMH HIDFKVDKNL INTGVGILIA 720
  721 FLIFTVLIPL NDWKIDKKIS IALLTLYIVV TCISVFLEVH QV