YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTN2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRNTTTNKN ANLNNSRNAN APGEAGHQNK TGLIYWTNPS KSGASFAATL VSLLILRNVN  60
   61 VISVLLKIGY MVLFTSFAVE LSTKVLFDKG VVSRFGMQES PDLVGVLKPH IDRELDRLPA 120
  121 LEDRIRKLVF AHRTRNNFTI GVSLYFLHGL FAIFSMNTVL IMTTIFLYTV PLIYDRKQAR 180
  181 IDRAIDRMKD LVIHRFHKNY NKVVEKTEPY IDKIIPPQTD EGSYSTSISN ENKSSTSQRN 240
  241 KSGLSSSEFD NMNDTSASKS GKDSYSTSQY NRAEYPVSQN ENIGTLKSGK QEIPTEKDFN 300
  301 NRHENFSKPD VKTYDPRTVD IEEELAAHQR ELEQNLKDGD YNLVGSKEIP DPITVPAPTR 360
  361 HTTKPAESQS IPIKNNETLH KTTHGLKQKL QHA

Type	Start	End	Confidence
Cytoplasmic	1	45	0.73
Transmembrane Helix	46	78	0.54
Non-Cytoplasmic	79	145	0.69
Transmembrane Helix	146	170	0.84
Cytoplasmic	171	393	0.76