YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110180269
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKEQCLAM VSSSAPTPRS GVYYFSQGWK LIGLPGIRRY VFLPLLVNVL LMGAAFWWLF  60
   61 TRLGSWIPSL MSHVPDWLQW LNYLLWPVVV LSILLVFGYF FSTIANWIAA PFSGLLAEQL 120
  121 EARLTGATPP DVGVFGIMKD IPRIMKREWQ KLAWYLPRAI VLLLLYFIPG VGQTVAPVLW 180
  181 FLFSAWMLAI QYCDYPFDNH KVPFKTMREA LRSRKVMNMQ FGALTSLFTM IPVLNLVILP 240
  241 VAICGATAMW VDCYRDRHAS WK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.96
Transmembrane Helix	40	61	0.94
Non-Cytoplasmic	62	82	0.91
Transmembrane Helix	83	103	0.92
Cytoplasmic	104	153	0.92
Transmembrane Helix	154	181	0.80
Non-Cytoplasmic	182	226	0.75
Transmembrane Helix	227	251	0.85
Cytoplasmic	252	262	0.74