YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VCX1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.36
Transmembrane Helix	33	56	0.78
Cytoplasmic	57	60	0.36
Transmembrane Helix	61	82	0.85
Non-Cytoplasmic	83	91	0.43
Transmembrane Helix	92	114	0.74
Cytoplasmic	115	123	0.57
Transmembrane Helix	124	147	0.88
Non-Cytoplasmic	148	157	0.58
Transmembrane Helix	158	183	0.81
Cytoplasmic	184	198	0.60
Transmembrane Helix	199	219	0.87
Non-Cytoplasmic	220	252	0.58
Transmembrane Helix	253	275	0.85
Cytoplasmic	276	283	0.51
Transmembrane Helix	284	307	0.76
Non-Cytoplasmic	308	316	0.47
Transmembrane Helix	317	342	0.85
Cytoplasmic	343	349	0.43
Transmembrane Helix	350	372	0.86
Non-Cytoplasmic	373	377	0.51
Transmembrane Helix	378	399	0.89
Cytoplasmic	400	411	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATTPLLTV ANSHPARNPK HTAWRAAVYD LQYILKASPL NFLLVFVPLG LIWGHFQLSH  60
   61 TLTFLFNFLA IIPLAAILAN ATEELADKAG NTIGGLLNAT FGNAVELIVS IIALKKGQVR 120
  121 IVQASMLGSL LSNLLLVLGL CFIFGGYNRV QQTFNQTAAQ TMSSLLAIAC ASLLIPAAFR 180
  181 ATLPHGKEDH FIDGKILELS RGTSIVILIV YVLFLYFQLG SHHALFEQQE EETDEVMSTI 240
  241 SRNPHHSLSV KSSLVILLGT TVIISFCADF LVGTIDNVVE STGLSKTFIG LIVIPIVGNA 300
  301 AEHVTSVLVA MKDKMDLALG VAIGSSLQVA LFVTPFMVLV GWMIDVPMTL NFSTFETATL 360
  361 FIAVFLSNYL ILDGESNWLE GVMSLAMYIL IAMAFFYYPD EKTLDSIGNS L