YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SNA4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCCYCVCCTV SDFILYIVAF FFPPAAVLLR SGPCSSDFLL NVLLTLLGFL PGMLHAFYYI  60
   61 TITSPLRNAE YVYYYQQGWV DSERNVPSNR PQNSQTPQNR PQQGSSARNV YPSVETPLLQ 120
  121 GAAPHDNKQS LVESPPPYVP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.70
Transmembrane Helix	9	29	0.73
Non-Cytoplasmic	30	37	0.57
Transmembrane Helix	38	59	0.91
Cytoplasmic	60	140	0.68