YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDL027C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKVPVGLAS RTRELMNSVT LNSLNNGKGF NMYLPGILRA FPKPVPSAIT SPAIPKYRGE  60
   61 SFQFRKLSCI SSNYCSTTHQ FLSSLKSSTS RLVGKRAFHS SRRAEIKFIF SSKSPKNGNK 120
  121 PFVKVYKVSP FFIIFATASI FTFILTSTIV VIPLIFHFFF PLLIMFFFFK QFKKWQKNIF 180
  181 YKDVLTSLPK TKLKITLPTM RSLQLQPMVQ SWKEISSRMG IPNEFAKGLN VDLVKQEETR 240
  241 KQFLSFLQKR VLESFTKNEL GIRSYFLGDS VEKWIKESYD LELDIDNCRS ELRKFQTFIF 300
  301 SSVRYKLYLD SMKNLPLNPS KKLEGKKHIA DVYVIILDES FPAIMFNGGA YSKADFFKIL 360
  361 QESETSNSSK TLNTIIAIKS VNTLLSKHFV ITTNGDSGEF FSKYNISKIN DKNTEYTLKE 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	124	0.97
Transmembrane Helix	125	145	0.85
Non-Cytoplasmic	146	148	0.62
Transmembrane Helix	149	169	0.84
Cytoplasmic	170	420	0.85