YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TSC13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPITIKSRSK GLRDTEIDLS KKPTLDDVLK KISANNHNIS KYRIRLTYKK ESKQVPVISE  60
   61 SFFQEEADDS MEFFIKDLGP QISWRLVFFC EYLGPVLVHS LFYYLSTIPT VVDRWHSASS 120
  121 DYNPFLNRVA YFLILGHYGK RLFETLFVHQ FSLATMPIFN LFKNCFHYWV LSGLISFGYF 180
  181 GYGFPFGNAK LFKYYSYLKL DDLSTLIGLF VLSELWNFYC HIKLRLWGDY QKKHGNAKIR 240
  241 VPLNQGIFNL FVAPNYTFEV WSWIWFTFVF KFNLFAVLFL TVSTAQMYAW AQKKNKKYHT 300
  301 RRAFLIPFVF

Type	Start	End	Confidence
Cytoplasmic	1	85	0.94
Transmembrane Helix	86	105	0.58
Non-Cytoplasmic	106	128	0.54
Transmembrane Helix	129	143	0.34
Cytoplasmic	144	164	0.63
Transmembrane Helix	165	186	0.88
Non-Cytoplasmic	187	202	0.75
Transmembrane Helix	203	220	0.83
Cytoplasmic	221	240	0.70
Transmembrane Helix	241	258	0.72
Non-Cytoplasmic	259	268	0.60
Transmembrane Helix	269	291	0.87
Cytoplasmic	292	310	0.97