YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190406467
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLVTQYAA PLFERYPQLH DYLPTLERPF FNISLWEHFD DVVTRVTNGR FVPSEFQFIA  60
   61 GELPLSTLPP VLYAITAYYV IIFGGRFLLS KSKPFKLNGL FQLHNLVLTS LSLTLLLLMV 120
  121 EQLVPIIVQH GLYFAICNIG AWTQPLVTLY YMNYIVKFIE FIDTFFLVLK HKKLTFLHTY 180
  181 HHGATALLCY TQLMGTTSIS WVPISLNLGV HVVMYWYYFL AARGIRVWWK EWVTRFQIIQ 240
  241 FVLDIGFIYF AVYQKAVHLY FPILPHCGDC VGSTTATFAG CAIISSYLVL FISFYINVYK 300
  301 RKGTKTSRVV KRAHGGVAAK VNEYVNVDLK NVPTPSPSPK PQHRRKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	67	0.83
Transmembrane Helix	68	89	0.83
Cytoplasmic	90	100	0.81
Transmembrane Helix	101	120	0.90
Non-Cytoplasmic	121	131	0.59
Transmembrane Helix	132	154	0.75
Cytoplasmic	155	173	0.70
Transmembrane Helix	174	194	0.74
Non-Cytoplasmic	195	200	0.69
Transmembrane Helix	201	220	0.91
Cytoplasmic	221	235	0.78
Transmembrane Helix	236	253	0.93
Non-Cytoplasmic	254	274	0.84
Transmembrane Helix	275	298	0.91
Cytoplasmic	299	347	0.99