YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HSP30
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDTLSSFLN RNEALGLNPP HGLDMHITKR GSDWLWAVFA VFGFILLCYV VMFFIAENKG  60
   61 SRLTRYALAP AFLITFFEFF AFFTYASDLG WTGVQAEFNH VKVSKSITGE VPGIRQIFYS 120
  121 KYIAWFLSWP CLLFLIELAA STTGENDDIS ALDMVHSLLI QIVGTLFWVV SLLVGSLIKS 180
  181 TYKWGYYTIG AVAMLVTQGV ICQRQFFNLK TRGFNALMLC TCMVIVWLYF ICWGLSDGGN 240
  241 RIQPDGEAIF YGVLDLCVFA IYPCYLLIAV SRDGKLPRLS LTGGFSHHHA TDDVEDAAPE 300
  301 TKEAVPESPR ASGETAIHEP EPEAEQAVED TA

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.93
Transmembrane Helix	34	56	0.93
Cytoplasmic	57	65	0.81
Transmembrane Helix	66	86	0.92
Non-Cytoplasmic	87	121	0.90
Transmembrane Helix	122	142	0.90
Cytoplasmic	143	154	0.82
Transmembrane Helix	155	178	0.87
Non-Cytoplasmic	179	183	0.84
Transmembrane Helix	184	202	0.92
Cytoplasmic	203	212	0.77
Transmembrane Helix	213	233	0.92
Non-Cytoplasmic	234	247	0.89
Transmembrane Helix	248	269	0.93
Cytoplasmic	270	332	0.97