YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ORFP:2449
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKEQTSGN TDLENAPAGY YSSHDNDVNG VAEDERPSHD SLGKIYTGGD NNEYIYIGRQ  60
   61 KFLKSDLYQA FGGTLNPGLA PAPVHKFANP APLGLSAFAL TTFVLSMFNA RAQGITVPNV 120
  121 VVGCAMFYGG LVQLIAGIWE IALENTFGGT ALCSYGGFWL SFAAIYIPWF GILEAYEDNE 180
  181 SDLNNALGFY LLGWAIFTFG LTVCTMKSTV MFFLLFFLLA LTFLLLSIGH FANRLGVTRA 240
  241 GGVLGVVVAF IAWYNAYAGV ATKQNSYVLA RPFPLPSTER VIF

Type	Start	End	Confidence
Cytoplasmic	1	86	0.86
Transmembrane Helix	87	110	0.76
Non-Cytoplasmic	111	114	0.58
Transmembrane Helix	115	139	0.83
Cytoplasmic	140	146	0.60
Transmembrane Helix	147	170	0.84
Non-Cytoplasmic	171	185	0.66
Transmembrane Helix	186	205	0.91
Cytoplasmic	206	210	0.62
Transmembrane Helix	211	232	0.90
Non-Cytoplasmic	233	236	0.63
Transmembrane Helix	237	257	0.88
Cytoplasmic	258	283	0.67