YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VBA3_YEAST
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.77
Transmembrane Helix	8	30	0.84
Cytoplasmic	31	36	0.89
Transmembrane Helix	37	60	0.90
Non-Cytoplasmic	61	67	0.77
Transmembrane Helix	68	88	0.93
Cytoplasmic	89	130	0.93
Transmembrane Helix	131	152	0.92
Non-Cytoplasmic	153	163	0.88
Transmembrane Helix	164	185	0.96
Cytoplasmic	186	205	0.96
Transmembrane Helix	206	228	0.92
Non-Cytoplasmic	229	247	0.89
Transmembrane Helix	248	269	0.92
Cytoplasmic	270	277	0.81
Transmembrane Helix	278	298	0.93
Non-Cytoplasmic	299	306	0.81
Transmembrane Helix	307	328	0.88
Cytoplasmic	329	350	0.83
Transmembrane Helix	351	371	0.75
Non-Cytoplasmic	372	418	0.83
Transmembrane Helix	419	437	0.75
Cytoplasmic	438	458	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMLIVGRVV ASVGGSGLQT LCFVIGCTMV GERSRPLVIS ILSCAFAVAA IVGPIIGGAF  60
   61 TTHVTWRWCF YINLPIGGLA IIMFLLTYKA ENKGILQQIK DAIGTISSFT FSKFRHQVNF 120
  121 KRLMNGIIFK FDFFGFALCS AGLVLFLLGL TFGGNKYSWN SGQVIAYLVL GVLLFIFSLV 180
  181 YDFFLFDKFN PEPDNISYRP LLLRRLVAKP AIIIINMVTF LLCTGYNGQM IYSVQFFQLI 240
  241 FASSAWKAGL HLIPIVITNV IAAIASGVIT KKLGLVKPLL IFGGVLGVIG AGLMTLMTNT 300
  301 STKSTQIGVL LLPGFSLGFA LQASLMSAQL QITKDRPEAA MDFIEVTAFN TFMKSLGTTL 360
  361 GGVLSTTVFS ASFHNKVSRA HLEPYEGKTV DDMILYRLQN YDGSHSTIGN ILSDSIKNVF 420
  421 WMDLGFYALG FLFCSFSSNK KLIIPKKDET PEDNLEDK