YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.98
Transmembrane Helix	125	146	0.91
Non-Cytoplasmic	147	153	0.67
Transmembrane Helix	154	178	0.81
Cytoplasmic	179	196	0.73
Transmembrane Helix	197	219	0.73
Non-Cytoplasmic	220	235	0.79
Transmembrane Helix	236	256	0.89
Cytoplasmic	257	264	0.82
Transmembrane Helix	265	286	0.87
Non-Cytoplasmic	287	313	0.91
Transmembrane Helix	314	334	0.94
Cytoplasmic	335	353	0.90
Transmembrane Helix	354	374	0.94
Non-Cytoplasmic	375	405	0.93
Transmembrane Helix	406	425	0.88
Cytoplasmic	426	452	0.82
Transmembrane Helix	453	471	0.97
Non-Cytoplasmic	472	479	0.79
Transmembrane Helix	480	504	0.89
Cytoplasmic	505	524	0.94
Transmembrane Helix	525	547	0.92
Non-Cytoplasmic	548	560	0.87
Transmembrane Helix	561	581	0.88
Cytoplasmic	582	595	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSKSLYEL KDLKNSSTEI HATGQDNEIE YFETGSNDRP SSQPHLGYEQ HNTSAVRRFF  60
   61 DSFKRADQGP QDEVEATQMN DLTSAISPSS RQAQELEKNE SSDNIGANTG HKSDSLKKTI 120
  121 QPRHVLMIAL GTGIGTGLLV GNGTALVHAG PAGLLIGYAI MGSILYCIIQ ACGEMALVYS 180
  181 NLTGGYNAYP SFLVDDGFGF AVAWVYCLQW LCVCPLELVT ASMTIKYWTT SVNPDVFVII 240
  241 FYVLVITINI FGARGYAEAE FFFNCCKILM MTGFFILGII IDVGGAGNDG FIGGKYWHDP 300
  301 GAFNGKHAID RFKGVAATLV TAAFAFGGSE FIAITTAEQS NPRKAIPGAA KQMIYRILFL 360
  361 FLATIILLGF LVPYNSDQLL GSTGGGTKAS PYVIAVASHG VRVVPHFINA VILLSVLSMA 420
  421 NSSFYSSARL FLTLSEQGYA PKVFSYIDRA GRPLIAMGVS ALFAVIAFCA ASPKEEQVFT 480
  481 WLLAISGLSQ LFTWTAICLS HLRFRRAMKV QGRSLGELGF KSQTGVWGSA YACIMMILIL 540
  541 IAQFWVAIAP IGEGKLDAQA FFENYLAMPI LIALYVGYKV WHKDWKLFIR ETRST