YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LDB16
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVVDWSVQL CMGVISPLFR ALVQLPLSIF VWNGFQLVAL PINIPLRLFL GTSLSRLVAQ  60
   61 TSTLDFYVVL TLFQYFAVLC AFGSIIGLIF GFILGVFHSI CGVPSVYISL EWKRWFAPIR 120
  121 TVLERASTSI VNIMRGQTIA PIPMPKPNPT HISKPNMKKF HDEPGADDMT ITHDVNCYIT 180
  181 PCQTPTNEKI QHYNNDSFNT TTTDDEPTDI WDRSDTYQNS FVTNETLMSL SNRAKLRRNA 240
  241 SDADIVNIKI LRRNSR

Type	Start	End	Confidence
Cytoplasmic	1	17	0.42
Transmembrane Helix	18	50	0.65
Non-Cytoplasmic	51	72	0.37
Transmembrane Helix	73	107	0.77
Cytoplasmic	108	256	0.86