YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RER1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYDSSDTMN GGSSNPLITK MNTMKLLYQH YLDKVTPHAK ERWAVLGGLL CLFMVRITMA  60
   61 EGWYVICYGL GLFLLNQFLA FLTPKFDMSL QQDEENNELE AGEKSEEFRP FIRRLPEFKF 120
  121 WYNSIRATVI SLLLSLFSIF DIPVFWPILL MYFILLFFLT MRRQIQHMIK YRYIPLDIGK 180
  181 KKYSHSSN

Type	Start	End	Confidence
Cytoplasmic	1	42	0.88
Transmembrane Helix	43	60	0.57
Non-Cytoplasmic	61	61	0.49
Transmembrane Helix	62	83	0.77
Cytoplasmic	84	119	0.56
Transmembrane Helix	120	139	0.61
Non-Cytoplasmic	140	143	0.55
Transmembrane Helix	144	162	0.90
Cytoplasmic	163	188	0.96