YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110803754, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYKFFMPAI SLMGADCLKD AGDQLGELGF KKALIVTDKV LGQIGIVKKV TDVLDNKNIE  60
   61 YAIYDETKPN PTVKNVNDGL ALLKEKECDF VISLGGGSAH DCAKGIALLA TNGGEIKDYE 120
  121 GVDKSKKPQL PMVGINTTAG TGSEMTLFAI ITDEERHIKM ALVDKHLTPI IAVNDPMLML 180
  181 AMPKSLTAAT GMDALTHAIE AYVSTAATPI TDACAEKAIE LISNYLVNAV ENGQDVEARD 240
  241 MMAYAEYLAG MAFNNASLGY VHAMAHQLGG FYNLPHGVCN AILLPHVQEY NKSTSASRLA 300
  301 KIAKIMGGNI EGLTDEQGAD LCIDMIKSLS QTIGIPEGLG VLGVKESDFE TLATNALNDA 360
  361 CSLTNPRKGN LEEVIAIFKK AM

Type	Start	End	Confidence
Signal Peptide	1	17	0.56
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	382	0.99