YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110683899, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFEQDYFN LLINNYGFYV EDLKGEQDKE LWIALKTVKD DGKYAVIISK SYEEEENLKI  60
   61 AEDYLKSLGK SYSLHNIILY KSYDRDEKKD EDFSIDENCH RVIVDVQKRE VLKSDRSSEP 120
  121 LAKILEFLLK KKEEPKVPWY KKLRCGKVTG ILIGLNILAF LVCLIVATAL GAGFFRNIVE 180
  181 MNPKILYWMG AKHNNAIIFH GEYYRLVTSM FLHSGIVHLL FNMYALYILG DFIERIYGAK 240
  241 KYLVIYFVSG IVASIFSLYF SPVMGVGASG AIFGLLGAAL VFAYNEKDRI GKALVTNIIV 300
  301 IILLNVFIGL SMSNIDISAH FGGFIAGAIL GLFFHNYKII RK

Type	Start	End	Confidence
Cytoplasmic	1	148	0.99
Transmembrane Helix	149	172	0.90
Non-Cytoplasmic	173	208	0.92
Transmembrane Helix	209	230	0.88
Cytoplasmic	231	241	0.83
Transmembrane Helix	242	260	0.94
Non-Cytoplasmic	261	265	0.73
Transmembrane Helix	266	284	0.96
Cytoplasmic	285	292	0.86
Transmembrane Helix	293	312	0.94
Non-Cytoplasmic	313	316	0.87
Transmembrane Helix	317	337	0.91
Cytoplasmic	338	342	0.79