YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBR235W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.91
Transmembrane Helix	82	104	0.83
Non-Cytoplasmic	105	109	0.49
Transmembrane Helix	110	130	0.72
Cytoplasmic	131	141	0.69
Transmembrane Helix	142	166	0.81
Non-Cytoplasmic	167	196	0.89
Transmembrane Helix	197	215	0.94
Cytoplasmic	216	223	0.76
Transmembrane Helix	224	243	0.95
Non-Cytoplasmic	244	286	0.92
Transmembrane Helix	287	306	0.91
Cytoplasmic	307	318	0.84
Transmembrane Helix	319	341	0.90
Non-Cytoplasmic	342	362	0.90
Transmembrane Helix	363	386	0.86
Cytoplasmic	387	399	0.76
Transmembrane Helix	400	421	0.85
Non-Cytoplasmic	422	428	0.79
Transmembrane Helix	429	451	0.92
Cytoplasmic	452	470	0.68
Transmembrane Helix	471	505	0.84
Non-Cytoplasmic	506	1120	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSRFYQIPG THRPSSAISS SNESSSLLSA RRISQTYFNY QATPECQKVS SKYDPDNPNK  60
   61 DKLGTYDGVF VPTALNVLSI LMFLRFGFIL GQLGIICTIG LLLLSYTINL LTTLSISAIS 120
  121 TNGTVRGGGA YYMISRSLGP EFGGSIGLVF FLGQVFNAGM NAVGIIEPLL YNLGYSAQGE 180
  181 PPAALGELLP RGHWHEFTYA TVILFLCFSV AFVGSQTVSR AGNILFLVLA ASIFSIPLSA 240
  241 LIRSPFTEGG ISYTGPSWQT FHDNLLPHLT KGAAGSLLKG KETFNDLFGV FFPATAGIFA 300
  301 GAGMSSELRK PSKSIPKGTL WGLLFTFICY AVVVFSMGCS IPRRSLYDEV QIIQTISSVQ 360
  361 WVIFMGEMAT SLFSIIVGML GAAYVLEAIA KDNIIPGLEI FAHSPLYSLI FTWILTQLCL 420
  421 FSDVNKIATF ITMTFLMTFV VMNLACFLLG ISSAPNFRPS FKYFNRYTTA IGALLSVVAM 480
  481 LIVDGISASV LFLAMILLFL FIHYFSPPKS WGDVSQSLIY HQVRKYLLRL RQDNIKYWRP 540
  541 QILLFVDNPR TSWNLIRFCN HLKKGGLYIL GHVAVTADFP KQLNELKTQQ KAWMKIRDMA 600
  601 AIKAFVQVGT GPSLIWGIRN VFIGSGLGGM KPNITVVGFF DLESYRKHIP QSRSQNNLQK 660
  661 QVEIKATVPR STCSDVKINV PLPTDECKNE TKVNVQQWVQ IVEDLSLMQS NIAIAHGFKN 720
  721 LEIPNKRDSC FPKKTIDLYP IQMCGKVEAK GDQPAAITTN FDTYTLILQL AAILVTVPEW 780
  781 KRTHSLRVIL FVEQEYHRTN ETQRMKKLLQ VLRIDAEVLV VSLDQFRVYN TIVKGDPIVF 840
  841 DYVNSKLADN EWWKDLVEAR DTLKPKRRFS TIEPQTIAKQ FTQSRKYTSG VQKLGVSFTM 900
  901 NTRMPTNRID TPCESEDSDL DTDLTSIRDA FSASTNISVG KDLTTKSKTG SDRTNLLVKN 960
  961 LQSDVSTQSL RPVFSSNTLP RTRVVEDGTG EQPTLIPIAE PDLSNGNGTG SGIGNGNKLK1020
 1021 KPVLPELSPC CSKDSLVTAM QNLGFNDLPS TAQHLVLNDV MTQMSKSSDL IFSTLPVPAL1080
 1081 GTHEDHDASL QYVEDLDIWL EGLPPCMLIN SQTMTVTTAL