YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.99
Transmembrane Helix	110	131	0.93
Non-Cytoplasmic	132	146	0.83
Transmembrane Helix	147	169	0.90
Cytoplasmic	170	176	0.89
Transmembrane Helix	177	198	0.90
Non-Cytoplasmic	199	207	0.63
Transmembrane Helix	208	229	0.90
Cytoplasmic	230	237	0.90
Transmembrane Helix	238	260	0.93
Non-Cytoplasmic	261	267	0.81
Transmembrane Helix	268	288	0.93
Cytoplasmic	289	364	0.97
Transmembrane Helix	365	386	0.88
Non-Cytoplasmic	387	403	0.88
Transmembrane Helix	404	426	0.92
Cytoplasmic	427	445	0.94
Transmembrane Helix	446	469	0.88
Non-Cytoplasmic	470	474	0.68
Transmembrane Helix	475	495	0.91
Cytoplasmic	496	510	0.82
Transmembrane Helix	511	531	0.88
Non-Cytoplasmic	532	540	0.64
Transmembrane Helix	541	563	0.93
Cytoplasmic	564	572	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSEPFQKKN LGLQINSQES GTTRSTFHSL EDLGDDVINE SWDQVNQKRA NIDHDVFHEH  60
   61 PDSSPSLSAQ KAKTKEEEVA VKSSNSQSRD PSPDTQAHIP YTYFSKDQRL IIFGIIIFIG 120
  121 FLGPMSGNIY IPALPLLQRE YDVSATTINA TVSVFMAVFS VGPLFWGALA DFGGRKFLYM 180
  181 VSLSLMLIVN ILLAAVPVNI AALFVLRIFQ AFASSSVISL GAGTVTDVVP PKHRGKAIAY 240
  241 FMMGPNMGPI IAPIVAGLIL MKGNYWRWLF GFTSIMTGIA LILVTALLPE TLRCIVGNGD 300
  301 PKWGDKKDER ENNESPFFEG NKISHRRLFP DIGIRKPVNN DAFFQENFPK PPKAGLTLYW 360
  361 KMIKCPPIII TSVSTALLFS SYYAFSVTFS YYLEHDYRFT MLEIGAAYVC PGVAMLLGSQ 420
  421 SGGHLSDYLR SRWIKSHPKK KFPAEFRLLL NLIGILLTIC GTIGYGWAIF FHYHFVVLLV 480
  481 FSALTAFGMT WCSNTSMTYL TELFPKRAAG TVAVSSFFRN VGAAISSAII LQLCNAMGIG 540
  541 WCFTGLGLCS SISLIGILYL LIFQRKYTAK EF