YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSH1
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKELKILII ANIALLISII HYTFDLLTLC IDDTSKDALT DEQLNPPNGF NSTFYESPPQ  60
   61 LIPKIIHQTY KTNDIPEQWV KGRQKCIDLH PDYTYILWTD EMSDTFIKQE YPWFLDTFRS 120
  121 YEYPIERADA IRYFILSHYG GIYIDLDDGC ERRLDPLLKV PAFLRKTSPT GVSNDVMGSV 180
  181 PRHPFFLKVI KSLKHYKKNW YIPYMTIMGS TGPLFISVVW KQYKRWSNTA ENGAVRILQP 240
  241 ADYKMHNNSF FSISKGSSWH TGDANFMKTL ENHILSCVVT GFIFGFFILY GEFTFYTWLC 300
  301 SGPFNNKRYY IQWLSDKFKL HKWKLTSSYK NKEKRRNPTR HEYNSRGKRL RKDSNIPYDS 360
  361 VFLDIEKNHA KFTDLT

Type	Start	End	Confidence
Cytoplasmic	1	7	0.71
Transmembrane Helix	8	24	0.48
Non-Cytoplasmic	25	199	0.54
Transmembrane Helix	200	220	0.72
Cytoplasmic	221	272	0.40
Transmembrane Helix	273	296	0.74
Non-Cytoplasmic	297	376	0.49