YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IFA38
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFMQQLQEA GERFRCINGL LWVVFGLGVL KCTTLSLRFL ALIFDLFLLP AVNFDKYGAK  60
   61 TGKYCAITGA SDGIGKEFAR QMAKRGFNLV LISRTQSKLE ALQKELEDQH HVVVKILAID 120
  121 IAEDKESNYE SIKELCAQLP ITVLVNNVGQ SHSIPVPFLE TEEKELRNII TINNTATLLI 180
  181 TQIIAPKIVE TVKAENKKSG TRGLILTMGS FGGLIPTPLL ATYSGSKSFL QGWSNSLAGE 240
  241 LSKDAIDVEL IISYLVTSSM SKIRRSSLMI PNPQQFVKST LRSVGRRCGS QERYATMTPY 300
  301 WAHAVYQFVI TETFGVYSKI VNSINYSFHK SIRIRALKKA ARQVKKE

Type	Start	End	Confidence
Cytoplasmic	1	18	0.71
Transmembrane Helix	19	42	0.76
Non-Cytoplasmic	43	347	0.70