YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTC2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIPIILNA KNLSGMAGSI SICCWIVVFV PQIYENFRRQ SAEGLSLLFI VLWLLGDIFN  60
   61 VMGAMMQNLL PTMIILAAYY TLADLILLIQ CMWYDKEKKS ILQEVKKNVD PVHLPPANPI 120
  121 NETVLQDVFN EYEPLLPRIE EEDSQSYSSL ELGRTIVVKE RENFFNDFLI VSGVLIAGIL 180
  181 SWYISYCSGL DNGIPKKKPA FEQINLPAQI LGYLSAILYL GSRIPQIVLN FKRKSCEGVS 240
  241 FLFFLFACLG NTSFIISVLS ASWLIGSAGT LLMDFTVFIQ FFLYAKPKYE KILIDN

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.81
Transmembrane Helix	13	34	0.86
Cytoplasmic	35	43	0.82
Transmembrane Helix	44	64	0.88
Non-Cytoplasmic	65	72	0.66
Transmembrane Helix	73	94	0.86
Cytoplasmic	95	163	0.99
Transmembrane Helix	164	185	0.93
Non-Cytoplasmic	186	205	0.90
Transmembrane Helix	206	227	0.82
Cytoplasmic	228	237	0.85
Transmembrane Helix	238	258	0.91
Non-Cytoplasmic	259	263	0.65
Transmembrane Helix	264	284	0.86
Cytoplasmic	285	296	0.87