YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGP2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	92	0.98
Transmembrane Helix	93	115	0.90
Non-Cytoplasmic	116	122	0.84
Transmembrane Helix	123	147	0.88
Cytoplasmic	148	170	0.74
Transmembrane Helix	171	192	0.73
Non-Cytoplasmic	193	200	0.81
Transmembrane Helix	201	223	0.88
Cytoplasmic	224	229	0.89
Transmembrane Helix	230	251	0.91
Non-Cytoplasmic	252	285	0.95
Transmembrane Helix	286	307	0.92
Cytoplasmic	308	326	0.92
Transmembrane Helix	327	347	0.95
Non-Cytoplasmic	348	383	0.92
Transmembrane Helix	384	403	0.89
Cytoplasmic	404	427	0.87
Transmembrane Helix	428	448	0.91
Non-Cytoplasmic	449	458	0.85
Transmembrane Helix	459	481	0.91
Cytoplasmic	482	500	0.93
Transmembrane Helix	501	524	0.88
Non-Cytoplasmic	525	534	0.90
Transmembrane Helix	535	556	0.93
Cytoplasmic	557	596	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKERMTIDY ENDGDFEYDK NKYKTITTRI KSIEPSEGWL EPSGSVGHIN TIPEAGDVHV  60
   61 DEHEDRGSSI DDDSRTYLLY FTETRRKLEN RHVQLIAISG VIGTALFVAI GKALYRGGPA 120
  121 SLLLAFALWC VPILCITVST AEMVCFFPVS SPFLRLATKC VDDSLAVMAS WNFWFLECVQ 180
  181 IPFEIVSVNT IIHYWRDDYS AGIPLAVQVV LYLLISICAV KYYGEMEFWL ASFKIILALG 240
  241 LFTFTFITML GGNPEHDRYG FRNYGESPFK KYFPDGNDVG KSSGYFQGFL ACLIQASFTI 300
  301 AGGEYISMLA GEVKRPRKVL PKAFKQVFVR LTFLFLGSCL CVGIVCSPND PDLTAAINEA 360
  361 RPGAGSSPYV IAMNNLKIRI LPDIVNIALI TAAFSAGNAY TYCSSRTFYG MALDGYAPKI 420
  421 FTRCNRHGVP IYSVAISLVW ALVSLLQLNS NSAVVLNWLI NLITASQLIN FVVLCIVYLF 480
  481 FRRAYHVQQD SLPKLPFRSW GQPYTAIIGL VSCSAMILIQ GYTVFFPKLW NTQDFLFSYL 540
  541 MVFINIGIYV GYKFIWKRGK DHFKNPHEID FSKELTEIEN HEIESSFEKF QYYSKA