YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110801621, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKLMLLFL TISILMMVLV GCSNNSNNIQ KNSTNKEKIT VATSGTYYPF TFLEGGELKG  60
   61 FEVDVWNEIG KRLGYDVEFK TASFSGLFGM LESGKVNTIA NQITVTPERE EKYYFSEPYV 120
  121 YSGAQIIVKK GNDSIKSFDD LKGKKVGVDL GSNYEKIVKD KDENNEIKIL TYQNTDAAFN 180
  181 ELLLGRIDAV VIDRVSAIAA IKEKDLNLQL AGEPIDKIEN AYPFVKDEKG KDLSENVNKA 240
  241 LDEMKKDGTL KSISEKWLGM NVSVPNNQEN GNNIIDNNKN NSIGFDFIYS LDLIPMLLKA 300
  301 INVTISLSVF GVILGLIVGI ALAMIRVYKI PVLKQIAEVY ISFFRGTPLL VQLFLLYFGV 360
  361 PQVIPSLQNM NAFTAALIGL GLNASAYIAE ILRSSIDAID KGQMEACLSL GMTRAQALKR 420
  421 VVLPQAFRIA IPPLGNIFVD TVKGSSLAFT LGVVELLAKA QMEAAASYKF FESYVVVAIM 480
  481 YWIIIGFFNY LQKILEKKLS VY

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	302	0.99
Transmembrane Helix	303	325	0.89
Cytoplasmic	326	340	0.82
Transmembrane Helix	341	360	0.91
Non-Cytoplasmic	361	371	0.72
Transmembrane Helix	372	391	0.88
Cytoplasmic	392	436	0.84
Transmembrane Helix	437	454	0.39
Non-Cytoplasmic	455	469	0.49
Transmembrane Helix	470	491	0.86
Cytoplasmic	492	502	0.59