YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190408735
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPQVSNIII MLVMMQLSRR IDMEDPTIIM YIRILYCSSI GISWIIYQMA RKRIVAKNDM  60
   61 TTMKYVEPGN AMSGEGEKLQ VTTVRDYDLK EIDSAIKSIY TGMAMMGFMH LYLKYTNPLF 120
  121 MQSISPVKSA LEHNEVKIHL FGKPATGDLK RPFKAPSLFG GMGQTGPKTD KKSIEEAERA 180
  181 GNAGVKAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.63
Transmembrane Helix	29	47	0.82
Cytoplasmic	48	98	0.58
Transmembrane Helix	99	113	0.35
Non-Cytoplasmic	114	188	0.58