YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMC2
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEFPTPQL LDELEDQQKV TTPNEKRELS SNRVLKDIFA GTIGGIAQVL VGQPFDTTKV  60
   61 RLQTATTRTT TLEVLRNLVK NEGVFAFYKG ALTPLLGVGI CVSVQFGVNE AMKRFFQNYN 120
  121 ASKNPNMSSQ DVDLSRSNTL PLSQYYVCGL TGGVVNSFLA SPIEQIRIRL QTQTSNGGDR 180
  181 EFKGPWDCIK KLKAQGGLMR GLFPTMIRAG HGLGTYFLVY EALVAREIGT GLTRNEIPPW 240
  241 KLCLFGAFSG TMLWLTVYPL DVVKSIIQND DLRKPKYKNS ISYVAKTIYA KEGIRAFFKG 300
  301 FGPTMVRSAP VNGATFLTFE LVMRFLGEE

Type	Start	End	Confidence
Cytoplasmic	1	84	0.67
Transmembrane Helix	85	108	0.62
Non-Cytoplasmic	109	141	0.62
Transmembrane Helix	142	160	0.46
Cytoplasmic	161	236	0.52
Transmembrane Helix	237	258	0.63
Non-Cytoplasmic	259	329	0.49