YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AAC3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDAKQQET NFAINFLMGG VSAAIAKTAA SPIERVKILI QNQDEMIKQG TLDKKYSGIV  60
   61 DCFKRTAKQE GLISFWRGNT ANVIRYFPTQ ALNFAFKDKI KLMFGFKKEE GYGKWFAGNL 120
  121 ASGGAAGALS LLFVYSLDFA RTRLAADAKS SKKGGARQFN GLTDVYKKTL KSDGIAGLYR 180
  181 GFMPSVVGIV VYRGLYFGMF DSLKPLVLTG SLDGSFLASF LLGWVVTTGA STCSYPLDTV 240
  241 RRRMMMTSGQ AVKYNGAIDC LKKIVASEGV GSLFKGCGAN ILRSVAGAGV ISMYDQLQMI 300
  301 LFGKKFK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.75
Transmembrane Helix	12	30	0.65
Non-Cytoplasmic	31	114	0.76
Transmembrane Helix	115	135	0.78
Cytoplasmic	136	175	0.88
Transmembrane Helix	176	196	0.89
Non-Cytoplasmic	197	215	0.86
Transmembrane Helix	216	237	0.92
Cytoplasmic	238	307	0.88