YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YRO2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYVELLKR GGNEAIKINP PTGADFHITS RGSDWLFTVF CVNLLFGVIL VPLMFRKPVK  60
   61 DRFVYYTAIA PNLFMSIAYF TMASNLGWIP VRAKYNHVQT STQKEHPGYR QIFYARYVGW 120
  121 FLAFPWPIIQ MSLLGGTPLW QIAFNVGMTE IFTVCWLIAA CVHSTYKWGY YTIGIGAAIV 180
  181 VCISLMTTTF NLVKARGKDV SNVFITFMSV IMFLWLIAYP TCFGITDGGN VLQPDSATIF 240
  241 YGIIDLLILS ILPVLFMPLA NYLGIERLGL IFDEEPAEHV GPVAEKKMPS PASFKSSDSD 300
  301 SSIKEKLKLK KKHKKDKKKA KKAKKAKKAK KAQEEEEDVA TDSE

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.87
Transmembrane Helix	35	55	0.94
Cytoplasmic	56	62	0.85
Transmembrane Helix	63	83	0.91
Non-Cytoplasmic	84	116	0.81
Transmembrane Helix	117	134	0.89
Cytoplasmic	135	141	0.60
Transmembrane Helix	142	163	0.81
Non-Cytoplasmic	164	170	0.70
Transmembrane Helix	171	193	0.90
Cytoplasmic	194	201	0.85
Transmembrane Helix	202	223	0.89
Non-Cytoplasmic	224	238	0.88
Transmembrane Helix	239	260	0.91
Cytoplasmic	261	344	0.97