YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CST26
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHQKIAHKV RKVVVPGISL LIFFQGCLIL LFLQLTYKTL YCRNDIRKQI GLNKTKRLFI  60
   61 VLVSSILHVV APSAVRITTE NSSVPKGTFF LDLKKKRILS HLKSNSVAIC NHQIYTDWIF 120
  121 LWWLAYTSNL GANVFIILKK SLASIPILGF GMRNYNFIFM SRKWAQDKIT LSNSLAGLDS 180
  181 NARGAGSLAG KSPERITEEG ESIWNPEVID PKQIHWPYNL ILFPEGTNLS ADTRQKSAKY 240
  241 AAKIGKKPFK NVLLPHSTGL RYSLQKLKPS IESLYDITIG YSGVKQEEYG ELIYGLKSIF 300
  301 LEGKYPKLVD IHIRAFDVKD IPLEDENEFS EWLYKIWSEK DALMERYYST GSFVSDPETN 360
  361 HSVTDSFKIN RIELTEVLIL PTLTIIWLVY KLYCFIF

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.67
Transmembrane Helix	13	37	0.82
Cytoplasmic	38	57	0.61
Transmembrane Helix	58	75	0.74
Non-Cytoplasmic	76	118	0.85
Transmembrane Helix	119	138	0.64
Cytoplasmic	139	376	0.75
Transmembrane Helix	377	394	0.53
Non-Cytoplasmic	395	397	0.56