YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSG2
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.90
Transmembrane Helix	53	72	0.88
Cytoplasmic	73	137	0.96
Transmembrane Helix	138	156	0.92
Non-Cytoplasmic	157	167	0.72
Transmembrane Helix	168	188	0.90
Cytoplasmic	189	194	0.84
Transmembrane Helix	195	217	0.85
Non-Cytoplasmic	218	245	0.92
Transmembrane Helix	246	268	0.91
Cytoplasmic	269	285	0.89
Transmembrane Helix	286	305	0.92
Non-Cytoplasmic	306	324	0.92
Transmembrane Helix	325	345	0.95
Cytoplasmic	346	354	0.83
Transmembrane Helix	355	374	0.90
Non-Cytoplasmic	375	385	0.72
Transmembrane Helix	386	404	0.93
Cytoplasmic	405	410	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTLLWFSS VIGYVIQTKC LSNIQSKKEI SVGPNGTIAT PETNGDNGNS SSLTFYLTFM  60
   61 YFASWLLLVP ASRLWEKMRP MFVSDSDSNR NSQFDNNNSG SVTNEDVDTF SHVLDDPQPR 120
  121 IPAQQQKQKI ISVATFKYVA KLTVLALIMI VADLTYNMAL SLSPAFDVAL MQNTAIFEIV 180
  181 TLLYGVCGIS RKNYVFRNFL IMMNAVIGIL IISYTKATCD MLAGKLSVNP NTGELSDPFL 240
  241 FDRLKGALIC GLGALIMGPF AVLWNRWFCS NISKNENSAV VLVKQSTHMA LIGIIGMVIL 300
  301 LPFIPKFPSR ESVESISLFY NDKSFWFSLL GSIIFGSLPS LISILELNRK APAEYLTTCN 360
  361 LGAIIFMGLA EWVCEPTQTT IVRWEVIGYI MLTVSLLVLS VTLGEGKYHH