YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDS1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNPEMKPH GTSKEIVESV TDATSKAIDK LQEELHKDAS ESVTPVTKES TAATKESRKY  60
   61 NFFIRTVWTF VMISGFFITL ASGHAWCIVL ILGCQIATFK ECIAVTSASG REKNLPLTKT 120
  121 LNWYLLFTTI YYLDGKSLFK FFQATFYEYP VLNFIVTNHK FICYCLYLMG FVLFVCSLRK 180
  181 GFLKFQFGSL CVTHMVLLLV VFQAHLIIKN VLNGLFWFLL PCGLVIVNDI FAYLCGITFG 240
  241 KTKLIEISPK KTLEGFLGAW FFTALASIIL TRILSPYTYL TCPVEDLHTN FFSNLTCELN 300
  301 PVFLPQVYRL PPIFFDKVQI NSITVKPIYF HALNLATFAS LFAPFGGFFA SGLKRTFKVK 360
  361 DFGHSIPGHG GITDRVDCQF IMGSFANLYY ETFISEHRIT VDTVLSTILM NLNDKQIIEL 420
  421 IDILIRFLSK KGIISAKNFE KLADIFNVTK KSLTNHS

Type	Start	End	Confidence
Cytoplasmic	1	61	0.93
Transmembrane Helix	62	88	0.79
Non-Cytoplasmic	89	155	0.71
Transmembrane Helix	156	178	0.87
Cytoplasmic	179	186	0.80
Transmembrane Helix	187	207	0.94
Non-Cytoplasmic	208	214	0.86
Transmembrane Helix	215	237	0.93
Cytoplasmic	238	255	0.86
Transmembrane Helix	256	274	0.94
Non-Cytoplasmic	275	329	0.94
Transmembrane Helix	330	350	0.91
Cytoplasmic	351	457	0.95