YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76786313, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.96
Transmembrane Helix	125	148	0.89
Non-Cytoplasmic	149	192	0.85
Transmembrane Helix	193	213	0.84
Cytoplasmic	214	223	0.68
Transmembrane Helix	224	244	0.69
Non-Cytoplasmic	245	250	0.70
Transmembrane Helix	251	274	0.88
Cytoplasmic	275	383	0.81
Transmembrane Helix	384	407	0.93
Non-Cytoplasmic	408	727	0.94
Transmembrane Helix	728	749	0.84
Cytoplasmic	750	763	0.71
Transmembrane Helix	764	785	0.87
Non-Cytoplasmic	786	801	0.90
Transmembrane Helix	802	826	0.88
Cytoplasmic	827	846	0.91
Transmembrane Helix	847	871	0.89
Non-Cytoplasmic	872	901	0.91
Transmembrane Helix	902	921	0.82
Cytoplasmic	922	931	0.78
Transmembrane Helix	932	955	0.90
Non-Cytoplasmic	956	1167	0.91
Transmembrane Helix	1168	1191	0.80
Cytoplasmic	1192	1206	0.86
Transmembrane Helix	1207	1226	0.85
Non-Cytoplasmic	1227	1233	0.79
Transmembrane Helix	1234	1255	0.81
Cytoplasmic	1256	1283	0.76
Transmembrane Helix	1284	1310	0.85
Non-Cytoplasmic	1311	1366	0.66
Transmembrane Helix	1367	1388	0.56
Cytoplasmic	1389	1403	0.52
Transmembrane Helix	1404	1429	0.84
Non-Cytoplasmic	1430	1486	0.55
Transmembrane Helix	1487	1506	0.76
Cytoplasmic	1507	1518	0.62
Transmembrane Helix	1519	1541	0.90
Non-Cytoplasmic	1542	1549	0.57
Transmembrane Helix	1550	1576	0.75
Cytoplasmic	1577	1603	0.65
Transmembrane Helix	1604	1634	0.79
Non-Cytoplasmic	1635	1706	0.54
Transmembrane Helix	1707	1731	0.86
Cytoplasmic	1732	1955	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHMFTPPGP QSLRKFTRES LKAIESRIAE ENAKKSKNTE ERNKDNECSR KPNSGLEAGK  60
   61 TLPFIYGEVP KGLVSTPLED LDQFYSNHTT FIVVSKKKEI YRFNATPALY IFSSFNLLRR 120
  121 ISIQILVHFL FNFIIICTIL ANCAFMVYTQ TPDWAKNVEY VFTGIYTLEA LVKITARGFC 180
  181 VGRFTFLRDP WNWLDFIVIV MAYVTEFVDL GSVSALRAFR VLRALKTISV VPGLKTIVGA 240
  241 LIQSVKKLSD VMILTLFCLS VFALVGLQLF MGILKQKCVY STSFTENKEA CYKNKTCRDY 300
  301 INNPSNQYFL PGKKDALICG NSSDAGQCPE GYTCLKAGKN PDYGYTSFDS FGWAFLSLFR 360
  361 LMTQDFWENL YQQTLRAAGK TYMIFFVLVI FLGSFYLVNL ILAVVAMAYD EQNQATIDEA 420
  421 LKKEEEFNAM LEQITRQEQE AEAAAEQSKC EGLSGEKTDS SSDASKLSSK SAKERRNRKK 480
  481 KRQHQGESEK EEDSIKEGND RKPNFTFAVD GKIRRSRDRS YTSPRQSPLS FQGSLLTPRR 540
  541 DSKASVFSFR GRIHSDNNYA DDEQSMFEET GSRRDSLFLP TRPERLFSNV SKSSLTPHLL 600
  601 LPSNGKARYV DDSNGMVMVT SGASAPNSPV IALNTPEVSR KRAMFDDTCA DSDDERRSRC 660
  661 NSQNFSKAYR QSMRERALSV ASGSNNPAEC SEIFKQRCEE WWFEFAENYL IWDCSPTWLR 720
  721 IKEVVHMIVM DPFADLFITI CIVINTVFMA MECYPMDGPY SSMLSTANVV FIGIFTAEMI 780
  781 FKVIALDPYS YFLEGWNIFD SIIVTLSLME LCLANVLSGI GFLRPFRLLR VFKLAKSWPT 840
  841 LNMLIKIIGN SLGALSNLTL VLAIIVFIFA VVGMQLFGKS YGECVCKISS DCMLPRWHMN 900
  901 DFFHSFLIVF RVLCGEWIET MWDCMEVAGQ PLCLTVFMMV MVIGNLVVLN LFLALLLSSF 960
  961 SADNLAVSGE EDENNLQIAV RRIRKGFTFI KTCLQSFFRS GCLRKKKQKS ADGNMIVNCK1020
 1021 ERKDSTNHTT IELVKSTGGT DLDSDTENFI SNPSLTVSVP IAAEESDFEC LNTEDFSSLS1080
 1081 SDLEEDKEKL SDVASSFSEG STVDLRPLGK DGEDALELVL EEEAYPEPCF TAGCVRRFRC1140
 1141 CQVDEEKGIW KKWWLLRQTC YNIVEHSWFE TFIVFMILLS SGALAFEDIY LDTRKSVKTI1200
 1201 LEFADKVFTY IFILEMLLKW VAYGFAKYFT NLWCWLDFVI VDVSLISLVA NALNYSELSA1260
 1261 IKSLRTLRAF RPLRALSRFD GMRVVVNALL GAIPSIMNVL LVCLIFWLIF SIVGVNFFAG1320
 1321 KFSECINITT EQRLPVSEVY NKTDCERMGK GVRWRNVIIN FDNVGNGYLA LLQVATFKGW1380
 1381 MPIMYAAVDS RNPEEQPEYE VNLYMYLYFV IFIILGAFFT LNLFIGVIID NFNQQKKKFG1440
 1441 GQDIFMTEEQ KKYYNAMKKL GSKKPQKPIP RPKNKIQGLI FDLVTKQAFD IFIMVLIWLN1500
 1501 MVTMMLETED QSIEMTRALY WINVIFIVLF TTECVLKMIA LRHYFFTVGW NVFDFIVVIL1560
 1561 SIVGMSLTEV IKKYFVSPTL FRVIRLARIG RVLRLIRSAK GIRTLLFALM MSLPALFNIG1620
 1621 LLLFLVMFIY AIFGMSNFAY VKKTAGIDDM FNFETFPNSM LCLFQITTSG GWDGLLAPML1680
 1681 NSKPPDCDPT KNFTGSSVVG DCGNPSIGIF FFVSYIIICF LIVVNMYIAV ILENFSVATE1740
 1741 ESAEPLSEDD FDRFYEVWEK FDPKATQFME YGKLSDFADS LDPPLRIPKP NRFQLMSMDL1800
 1801 PMVTGDRIHC LDILFAFTKR VLGEGGEMDM LHGQMEDRFM QSNPSKSSYE PITTTLRRKH1860
 1861 EDMSAAVIQR AFRKHLVRDS MKKVRNFKKK NKHQNGKVPS NQSMDKDMCN EDSDATAATS1920
 1921 SPPSYSSITE NAKNKYEKDK HEKEVGDKGN QVKKK