YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RFT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	40	0.89
Non-Cytoplasmic	41	51	0.64
Transmembrane Helix	52	70	0.91
Cytoplasmic	71	110	0.95
Transmembrane Helix	111	131	0.93
Non-Cytoplasmic	132	149	0.77
Transmembrane Helix	150	169	0.88
Cytoplasmic	170	181	0.81
Transmembrane Helix	182	202	0.90
Non-Cytoplasmic	203	219	0.93
Transmembrane Helix	220	242	0.89
Cytoplasmic	243	372	0.92
Transmembrane Helix	373	397	0.85
Non-Cytoplasmic	398	411	0.76
Transmembrane Helix	412	430	0.84
Cytoplasmic	431	441	0.58
Transmembrane Helix	442	461	0.94
Non-Cytoplasmic	462	469	0.62
Transmembrane Helix	470	489	0.89
Cytoplasmic	490	509	0.70
Transmembrane Helix	510	528	0.90
Non-Cytoplasmic	529	535	0.65
Transmembrane Helix	536	553	0.95
Cytoplasmic	554	574	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKNSQLPS TSEQILERST TGATFLMMGQ LFTKLVTFIL NNLLIRFLSP RIFGITAFLE  60
   61 FIQGTVLFFS RDAIRLSTLR ISDSGNGIID DDDEEEYQET HYKSKVLQTA VNFAYIPFWI 120
  121 GFPLSIGLIA WQYRNINAYF ITLPFFRWSI FLIWLSIIVE LLSEPFFIVN QFMLNYAARS 180
  181 RFESIAVTTG CIVNFIVVYA VQQSRYPMGV VTSDIDKEGI AILAFALGKL AHSITLLACY 240
  241 YWDYLKNFKP KKLFSTRLTK IKTRENNELK KGYPKSTSYF FQNDILQHFK KVYFQLCFKH 300
  301 LLTEGDKLII NSLCTVEEQG IYALLSNYGS LLTRLLFAPI EESLRLFLAR LLSSHNPKNL 360
  361 KLSIEVLVNL TRFYIYLSLM IIVFGPANSS FLLQFLIGSK WSTTSVLDTI RVYCFYIPFL 420
  421 SLNGIFEAFF QSVATGDQIL KHSYFMMAFS GIFLLNSWLL IEKLKLSIEG LILSNIINMV 480
  481 LRILYCGVFL NKFHRELFTD SSFFFNFKDF KTVIIAGSTI CLLDWWFIGY VKNLQQFVVN 540
  541 VLFAMGLLAL ILVKERQTIQ SFINKRAVSN SKDV