YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190405989
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQVQSWFPV QKQPTLAVTF TPLPQLSHAH LPLPPSHLVT KTDAMFQHQL LPTQLQPFPP  60
   61 SHTPLLLLLT VTTMAVTPRL SLLNVLKKLQ QPPFLQNHTL LLPLLTVTTT AVTPRLSLPR 120
  121 LPNKHHWPLA QSPSLLLQLL ILLLPAPSLV LSFNPKVWLL V

Type	Start	End	Confidence
Non-Cytoplasmic	1	61	0.50
Transmembrane Helix	62	83	0.69
Cytoplasmic	84	93	0.58
Transmembrane Helix	94	118	0.69
Non-Cytoplasmic	119	133	0.52
Transmembrane Helix	134	155	0.84
Cytoplasmic	156	161	0.43