YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRM9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPQYHFYFV SFRNLVLNEK CLRSKKQVMK SFNWYKTDRY FDPHNILQHH SRAIEKTRYK  60
   61 LGMQTSSEST DAKSDFLDEP SAYLIEKNVA LPKDIFGSYL SYWIYEVTRH KAAVILLVLI 120
  121 VTSILLLVFF YNTEFCVAFE ILLFSFCFPG TCMVVIAFSE PIGDREFKVK LLMEIITRKP 180
  181 AVKGKEWRTI TYKMNQYLFD HGLWDTPYYF YRDEDCHRYF LSLIKGRTFK KQKESSASNV 240
  241 KDAQSNDETA GTPNEAAESS SFSAGPNFIK LLTKAAEIEQ QFQKEYWRQE YPGVDEFF

Type	Start	End	Confidence
Cytoplasmic	1	111	0.98
Transmembrane Helix	112	131	0.95
Non-Cytoplasmic	132	137	0.79
Transmembrane Helix	138	159	0.90
Cytoplasmic	160	298	0.97