YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FLC2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	180	0.99
Transmembrane Helix	181	205	0.84
Cytoplasmic	206	219	0.74
Transmembrane Helix	220	242	0.82
Non-Cytoplasmic	243	348	0.98
Transmembrane Helix	349	374	0.87
Cytoplasmic	375	401	0.96
Transmembrane Helix	402	423	0.90
Non-Cytoplasmic	424	430	0.85
Transmembrane Helix	431	455	0.87
Cytoplasmic	456	492	0.96
Transmembrane Helix	493	513	0.92
Non-Cytoplasmic	514	518	0.87
Transmembrane Helix	519	539	0.92
Cytoplasmic	540	547	0.80
Transmembrane Helix	548	568	0.91
Non-Cytoplasmic	569	581	0.72
Transmembrane Helix	582	609	0.82
Cytoplasmic	610	783	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFLNTFARC LLTCFVLCSG TARSSDTNDT TPASAKHLQT TSLLTCMDNS QLTASFFDVK  60
   61 FYPDNNTVIF DIDATTTLNG NVTVKAELLT YGLKVLDKTF DLCSLGQVSL SPLSAGRIDV 120
  121 MSTQVIESSI TKQFPGIAYT IPDLDAQVRV VAYAQNDTEF ETPLACVQAI LSNGKTVQTK 180
  181 YAAWPIAAIS GVGVLTSGFV SVIGYSATAA HIASNSISLF IYFQNLAITA MMGVSRVPPI 240
  241 AAAWTQNFQW SMGIINTNFM QKIFDWYVQA TNGVSNVVVA NKDVLSISVQ KRAISMASSS 300
  301 DYNFDTILDD SDLYTTSEKD PSNYSAKILV LRGIERVAYL ANIELSNFFL TGIVFFLFFL 360
  361 FVVVVSLIFF KALLEVLTRA RILKETSNFF QYRKNWGSII KGTLFRLSII AFPQVSLLAI 420
  421 WEFTQVNSPA IVVDAVVILL IITGLLVYGT IRVFIKGRES LRLYKNPAYL LYSDTYFLNK 480
  481 FGFLYVQFKA DKFWWLLPLL SYAFLRSLFV AVLQNQGKAQ AMIIFVIELA YFVCLCWIRP 540
  541 YLDKRTNVFN IAIHLVNLIN AFFFLFFSNL FKQPAVVSSV MAVILFVLNA VFALFLLLFT 600
  601 IVTCTLALLH RNPDVRYQPM KDDRVSFIPK IQNDFDGKNK IDPELFELRK AVMDTNENEE 660
  661 EKMFRDDTFG KNLNANTNTA RLFDDETSSS SFKQNSSPFD ASEVTEQPVQ PTSAVMGTGG 720
  721 SFLSPQYQRA SSASRTNLAP NNTSTSSLMK PESSLYLGNS NKSYSHFNNN GSNENARNNN 780
  781 PYL