YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|207348022
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCRGLSRTP FFLREPLIKV ATWFITSPLW LIHWASINRI FAHRNIYRGN MGLYSPESEK  60
   61 SQLNMNYIGK DDSQSIFRRL NQNLKASNNN NDSNKNGLNM SDYSNNSPYG RSYDVRINQN 120
  121 SQNNGNGCFS GSIDSLVDEH IIPSPPLSPK LESKISHNGS PRMASSVLVG STPKGAVENV 180
  181 LFVKPVWPNG LSRKRYRYAT YGFLSQYKIF SNLAQPYSKN IINRYNNLAY NARHKYSKYN 240
  241 DDMTPPPLPS SSSRLPSPLA SPNLNRQARY NMRKQALYNN NLGKFESDTE WIPRKRKVYS 300
  301 PQRRTMTTSP HRAKKFSPSA STPHTNIASI EAIHDAPQYI PNVSWKKLPD YSPPLSTLPT 360
  361 DSNKSLKIEW KGSPMDLSTD PLRNELHPAE LVLAQTLRLP CDLYLDSKRR LFLEKVYRLK 420
  421 KGLPFRRTDA QKACRIDVNK ASRLFQAFEK VGWLQDSNFT KYL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.87
Transmembrane Helix	17	37	0.82
Non-Cytoplasmic	38	463	0.99