YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YAL018C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTGSLALA GIGGLVYKFG GGQSYEKLPY VNIPFNQYLD KVYKKHFSKV MSRTRYVLMN  60
   61 FFKDAFTGGA FMYPFKGFLE FNTNKSSYST TMLGILSSYL IMFALVSFVY WATITPMYTA 120
  121 FLIVLGPIGL FIAIFHSFLQ ANVFTLLFMR LSHFNNHLVE VCLEKNGLEE NLSEVKPIKY 180
  181 YAPINSIYFW AYYFPFKLVK YMLGLSVLFV LLVISFFPLI GPILFHILIS PFITQIYFTK 240
  241 VLRLQNFDNI QRRENIYLHA GQYASFGFLA GLIESVPILA GFAISTNTIG SVLFNLDHPM 300
  301 VPENLVETQA EIEAAPQDIN QQPNQ

Type	Start	End	Confidence
Cytoplasmic	1	90	0.76
Transmembrane Helix	91	114	0.86
Non-Cytoplasmic	115	118	0.50
Transmembrane Helix	119	144	0.81
Cytoplasmic	145	200	0.57
Transmembrane Helix	201	229	0.80
Non-Cytoplasmic	230	262	0.49
Transmembrane Helix	263	290	0.70
Cytoplasmic	291	325	0.50