YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHLERSRHQ QHPFHMVMPS PWPIVVSFAL LSLALSTALT MHGYIGNMNM VYLALFVLLT  60
   61 SSILWFRDIV AEATYLGDHT MAVRKGINLG FLMFVLSEVL IFAGLFWAYF HSAMSPDVTL 120
  121 GACWPPVGIE AVQPTELPLL NTIILLSSGA TVTYSHHALI AGNRNKALSG LLITFWLIVI 180
  181 FVTCQYIEYT NAAFTISDGV YGSVFYAGTG LHFLHMVMLA AMLGVNYWRM RNYHLTAGHH 240
  241 VGYETTIIYT HVLDVIWLFL YVVFYWWGV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	41	0.93
Non-Cytoplasmic	42	49	0.72
Transmembrane Helix	50	69	0.92
Cytoplasmic	70	86	0.94
Transmembrane Helix	87	110	0.91
Non-Cytoplasmic	111	136	0.95
Transmembrane Helix	137	158	0.88
Cytoplasmic	159	167	0.82
Transmembrane Helix	168	189	0.91
Non-Cytoplasmic	190	207	0.86
Transmembrane Helix	208	228	0.91
Cytoplasmic	229	246	0.87
Transmembrane Helix	247	267	0.91
Non-Cytoplasmic	268	269	0.84