YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110834362, gi...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKKATLKV EGQDLDLPIY TPTLGRDVID VSKLVANGVF TFDPGFTSTA SCESKITFID  60
   61 GEVGKLLHRG YSIEELAGQS EYLEVCYTLL YGELPTAEQK EKFVSTVKNH TMVHEQIRNF 120
  121 FNGFRRDAHP MAIMCGVVGA LSAFYHDSLD INNPEHREIT AYRLIAKMPT IAAMCYKYAL 180
  181 GQPFMYPRND LGYAENFLHM MFGNPCEESK ISPTLAKAMD RIFILHADHE QNASTSTVRL 240
  241 AGSSGANPFA CIAAGISALW GPAHGGANEA VLNMLDEIGS LDNIDAYIAK AKDKNDPFKL 300
  301 MGFGHRVYKN YDPRATVMRE SCHEVLAELG VNDPQLALAM KLEEIALNDP YFKEKKLFPN 360
  361 VDFYSGIILK AIGIPTSMFT VIFALSRTVG WIAHWNEMIS NPYKIGRPRQ LYTGEAERSF 420
  421 VPVNERK

Type	Start	End	Confidence
Cytoplasmic	1	127	0.55
Transmembrane Helix	128	146	0.35
Non-Cytoplasmic	147	366	0.68
Transmembrane Helix	367	389	0.64
Cytoplasmic	390	427	0.57