YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110834167, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKVHPILNL PNILTLIRVL AIPVLVLVFY LPFHWSDVCA ALLFLAAGIT DWLDGYLARK  60
   61 LNQTSPFGAF LDPVADKLIV AVALVMLVQV HATAWLAVPA MVIVSREITV SALREWMAEL 120
  121 GQRAKVAVSQ LGKIKTVTQM TAITLLLAQK PKFTLDGDII MNPWLWLSYG LLYLATAFTL 180
  181 WSMVSYLRAA APQLLKSQSK S

Type	Start	End	Confidence
Cytoplasmic	1	13	0.78
Transmembrane Helix	14	33	0.90
Non-Cytoplasmic	34	37	0.75
Transmembrane Helix	38	58	0.82
Cytoplasmic	59	77	0.78
Transmembrane Helix	78	98	0.86
Non-Cytoplasmic	99	164	0.86
Transmembrane Helix	165	187	0.86
Cytoplasmic	188	201	0.85