YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110833826, gi...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYILNLIHFS CKHHKPSLMD KLMACYSVFP STEVIMRSGF ILPLIAGVLA LQLSGCGDAG  60
   61 QSGQQQQQQA PEVGFVTVKA ATVTLNRELP GRTTAHQVAE VRPQVSGVIE KRLFEEGQEV 120
  121 SAGQPLYKID SRTYQAAVAS ARAELARATA TLNSNDLRAK RFKKLLDYKA VSQQEYDEAQ 180
  181 AQLDENKAAV AAARANLQSA QINLDYATIK APISGRIGRS SVTAGALVTA NQANALATIR 240
  241 QLDPIYVDLT QSSNELRQLR QAMQAGELQQ VSDDEARITL ILEDGSHYKE AGALQFSEFA 300
  301 VDESTGSVTL RALFPNPDGE LLPGMFVRGR LPEGQRKDAI LVPQKGITRD PTGQAYAMLI 360
  361 DDNNQVKKVK VRTERAVGNQ WLIADGLKDG DRLIVDGLQR IQPGAPVSPV DTEKANVEPA 420
  421 PAQQEQPQSP ASDAGEAQSA AQ

Type	Start	End	Confidence
Cytoplasmic	1	38	0.62
Transmembrane Helix	39	59	0.59
Non-Cytoplasmic	60	442	0.99