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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|110646414, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQGLLIFKQ GIATVFLLML AISGHSLTLS DEQDSYQAAH GMQWLAGPKQ AYSPEMALQA  60
   61 FLDDQGEKIH DKYPSLGFRK GLQWFLIPIE NQSGQSLWFA RMGRPHLDYL DIYLFDQQGK 120
  121 RLWHNRLGDR VPFHTRAFAH SHLVSTLNLP INTRRYLLLR AQGDNVIDLP VSVMSATAFN 180
  181 QQDTQVTIFY GLYFGAMVAI FLFNLLIFIS IRDRSYLLYV LYLGTFTLNI FTREGLSYQW 240
  241 LWPQATQWNH YSIPILNLLT LAFSILFTCQ FLELKKRAPT INRGLVATAS VLILFAPLTL 300
  301 IDFHFFIQAS TAIILPWLLV AIALSIWLIR QGYSPARYFL LAFTAVALAT MAYILKTFQL 360
  361 INGGWLLENI MPMGTFIEAL LLSFALAHRM TILKSENARI QNEANEILEQ RVSERTSELN 420
  421 AALNARSEFL AVMSHEIRTP LNGIIGTVDM LKGSPLNDEQ RHNLNVIEQS GNSLLNLIND 480
  481 ILDYSRIEAG KMPIEQTSFN LFNLLNESLT LFQHKAQIHS NALTLDVAPN VSERCLGDPV 540
  541 RLRQILVNLI SNAVKFTDNG TITVRAQRDP ANSDYLYFEV QDSGTGISEE QQRRLFDHFQ 600
  601 QGDSSTSRRY GGTGLGLAIC RQLVEIMGGE IGVDSKPKQG SRFWFRLPIP CTERADTCTT 660
  661 APAIDNQSVL FEGRLLIVDD NHINLMVAEG LCQKLGYETE VAESGLEAIA VLMSTTQPFD 720
  721 LILMDCEMPD MDGFETSRAI IKLQQENRLP WVPIIALTAH AIPDKIRACR DAGMIGHLAK 780
  781 PVNLARLQTT LRQALRSTGP RPSKARNHSD SQR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle