YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110646009, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLRNDSQRF GAIALLFHWL VALAVIGLFA LGFYMVDLGY YDPWYRKGPD LHRSVGVLLF  60
   61 IVMTLRLGWR FISPPPAPLA SHKPWEKISA HLTHWALYIL LFVAMVSGYL ISSADGSSVA 120
  121 VFNWFSVPSV SGHQTGLEDT AGLIHYWVTW AVIGLASVHA LAAIKHHFLD RDDTLRRILG 180
  181 LAPRTNPSPS TGTHNYS

Type	Start	End	Confidence
Cytoplasmic	1	13	0.87
Transmembrane Helix	14	34	0.93
Non-Cytoplasmic	35	50	0.90
Transmembrane Helix	51	72	0.88
Cytoplasmic	73	91	0.93
Transmembrane Helix	92	113	0.92
Non-Cytoplasmic	114	145	0.89
Transmembrane Helix	146	168	0.86
Cytoplasmic	169	197	0.97