YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_SHIF8
Protein type:	Globular with Signal Peptide
Type Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQRNASMTV IGAGSYGTAL AITLARNGHE VVLWGHDPEH IATLERDRCN AAFLPDVPFP  60
   61 DTLHLESDLV TALAASRNIL VVVPSHVFGE VLRQIKPLMR PDARLVWATK GLEAETGRLL 120
  121 QDVAREALGD QIPLAVISGP TFAKELAAGL PTAISLASTD QTFADDLQQL LHCGKSFRVY 180
  181 SNPDFIGVQL GGAVKNVIAI GAGMSDGIGF GANARTALIT RGLAEMSRLG AALGADPATF 240
  241 MGMAGLGDLV LTCTDNQSRN RRFGMMLGQG MDVQSAQEKI GQVVEGYRNT KEVRELAHRF 300
  301 GVEMPITEEI YQVLYCGKNA REAALTLLGR ARKDERSSH

Type	Start	End	Confidence
Signal Peptide	1	21	0.72
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	339	0.92