YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110763486
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNLTRYCTS TIMKSNIIKF LPVKKNLYTY TPKSVITNTT LTLMKRNSIL HKDLFKGYNI  60
   61 ITKGFASKSS QKSDKVLGKW LLSCSGMIFV AVILGGVTRL TESGLSMVTW KLLGEKMPIT 120
  121 ESQWHAEFER YKQFPEYKIN NQNMTLEEFK RIWWMEYLHR MWGRLIGAVF IVPATYFWAK 180
  181 GMLKPSMKIR ITILGSLIGL QGLMGWYMVK SGLEDRFVEP SDVPRVSQYR LAAHLGIAFL 240
  241 LYTGFLYNAL NYLVPAQKLT LNNSNVNISD LKSKLKKFRI LVHLTKGLVF FTALSGAFVA 300
  301 GMDAGLIYNT FPKMANKWIP DDIFAISPTW KNFTENPTTI QFDHRILGIT TLSLITYIAI 360
  361 ASRKYKLPGN AKKAAIAVLC AGYLQVLLGI STLLYHVPLP IAASHQSGSL IVLSTMIWLC 420
  421 HELKYLKYVL K

Type	Start	End	Confidence
Cytoplasmic	1	76	0.99
Transmembrane Helix	77	100	0.89
Non-Cytoplasmic	101	160	0.98
Transmembrane Helix	161	179	0.96
Cytoplasmic	180	188	0.86
Transmembrane Helix	189	209	0.92
Non-Cytoplasmic	210	230	0.93
Transmembrane Helix	231	251	0.92
Cytoplasmic	252	281	0.94
Transmembrane Helix	282	302	0.90
Non-Cytoplasmic	303	341	0.91
Transmembrane Helix	342	361	0.90
Cytoplasmic	362	373	0.84
Transmembrane Helix	374	395	0.93
Non-Cytoplasmic	396	401	0.78
Transmembrane Helix	402	421	0.89
Cytoplasmic	422	431	0.84