YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110761518
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAKAVAKVV AHSKLVARHS NKDFALSMTA FLMKIVGLWL AKNEQEQRKR RLTLMYTVIA  60
   61 ILFGVWVQFR DFYYSWPNFG NCAYTACNIL CLIMVLLKLF VLFVHRKEFI DLLVYTHENF 120
  121 WHTNYTNNEL LLLQNCKRIS MLCITLINVC AQGTIVSYVL TPIVENIGRN HSDRVLPFNM 180
  181 WVDLPTLFLS PYYEILFVLQ VLSLYHVGVC YICFDNLLCL MNLHAATQFR ILQHRLSDLG 240
  241 SGWDTRRSFN KIDRETSWSS CMENCYATFK LCVKQHQDRI TYCHRLNDIF TIIVLGHILV 300
  301 FSLLMCLVGF QVLMANSPPT RRLIFVFHIT GSLCQLLLFT YSCDSLIQES TNVGSAVYSG 360
  361 PWICLPMNRI GRTLRRDLRM VIIRSRKPCC LTASRFFPVS LETCTTVLST AMSYFTLMRQ 420
  421 SFAN

Type	Start	End	Confidence
Cytoplasmic	1	51	0.68
Transmembrane Helix	52	70	0.95
Non-Cytoplasmic	71	81	0.80
Transmembrane Helix	82	102	0.94
Cytoplasmic	103	140	0.96
Transmembrane Helix	141	161	0.71
Non-Cytoplasmic	162	194	0.62
Transmembrane Helix	195	225	0.60
Cytoplasmic	226	288	0.52
Transmembrane Helix	289	315	0.83
Non-Cytoplasmic	316	322	0.47
Transmembrane Helix	323	343	0.77
Cytoplasmic	344	393	0.57
Transmembrane Helix	394	415	0.61
Non-Cytoplasmic	416	424	0.67